| Name | Version | Summary | date |
| cytetype |
0.8.3 |
Python client for characterization of clusters from single-cell RNA-seq data. |
2025-07-30 14:24:39 |
| sccross |
1.0.6.0 |
Single cell multi-omics cross modal generation, multi-omics simulation and perturbation |
2025-07-29 23:14:49 |
| spatialcell |
1.1.1 |
Integrated pipeline for spatial transcriptomics cell segmentation and annotation using QuPath, Bin2cell, and TopAct |
2025-07-27 14:07:53 |
| akita-torch |
0.1.0 |
Pytorch implementation of Akita model for Hi-C prediction from DNA sequence |
2025-07-18 04:37:00 |
| torchakita |
0.1.1 |
Pytorch implementation of Akita model for Hi-C prediction from DNA sequence |
2025-07-18 00:17:19 |
| cell-decipher |
0.2.0 |
Spatial-omics data embedding and analysis |
2025-07-11 08:29:22 |
| allen-brain-colormaps |
0.1.2 |
Matplotlib and seaborn compatible colormaps for human brain cell types from the Allen Institute Brain Atlas |
2025-07-08 12:42:22 |
| hiscanner |
0.2b5 |
High-resolution single-cell copy number analysis. |
2025-02-06 22:21:17 |
| gene-scoring |
0.1.4 |
Gene set scoring package for single-cell RNA sequencing data with GPU acceleration. |
2025-02-03 07:05:57 |
| sc-dandelion |
0.5.1 |
sc-TCR/BCR-seq analysis tool |
2025-01-16 22:41:04 |
| scSLAT |
0.3.0 |
A graph deep learning based tool to align single cell spatial omics data |
2024-12-20 14:17:15 |
| singlecell-cookbook |
0.3.1 |
A collection of tools for analyzing single-cell genomics data. |
2024-12-19 00:53:42 |
| HCSIM |
1.2.0 |
HCSIM: A Single-Cell Genomics Simulator with Haplotype-Specific Copy Number Annotation. |
2024-12-17 08:22:29 |
| shannonca |
0.0.9 |
Informative Dimensionality Reduction via Shannon Component Analysis |
2024-12-14 17:08:58 |
| HopfieldModel |
1.0.1 |
A Python package to model single-cell data using Hopfield networks |
2024-12-11 01:22:28 |
| pixelgen-pixelator |
0.19.0 |
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays. |
2024-12-10 21:05:12 |
| opticlust |
0.3.0 |
Single cell clustering and recommendations at a glance |
2024-12-09 11:52:47 |
| muvi |
0.1.5 |
MuVI: A multi-view latent variable model with domain-informed structured sparsity for integrating noisy feature sets. |
2024-11-22 12:08:10 |
| squidpy |
1.6.2 |
Spatial Single Cell Analysis in Python |
2024-11-12 13:01:45 |
| multivelo |
0.1.5 |
Multi-omic extension of single-cell RNA velocity |
2024-09-23 18:46:01 |